During my one of my trips to visit my parents, while waiting in line to board the flight at the airport gate, the flight attendant in charge of scanning tickets made an announcement over the loudspeaker. As he explained that there was a small issue with our plane that the crew wanted to fix before takeoff, those of us in line glance around at each other… That did not sound reassuring!
We continued to stand in the gate’s lounge, anxiously wondering whether the flight would be cancelled, but the flight attendant shared an update twenty minutes later. The crew was ready for us to board!
Completely relieved, we hustled to get on the plane, and with an A-section boarding pass, I easily snagged a window seat on the Southwest flight. I stared out the window as the plane sped down the runway and took off into the sky, and I smiled as I watched the sun slowly dip below the clouds, turning the horizon a rosy pink. The sunset view was a nice perk of the delayed flight!
Eventually, I pulled out the latest Food Network Magazine and slowly flipped through the issue. I grew really excited as I read the middle featured pages… They had devoted an entire section to different flavor twists on classic chocolate chip cookies!
Back at home, I felt inspired to put my own little spin on my classic chocolate chip cookies… Which resulted in these healthy honey chocolate chip cookies! They’re supremely soft with plenty of chocolate chips, yet unlike many of the recipes in my magazine, these contain no refined flour or white sugar — and they require zero chilling time either!
That’s definitely my kind of cookie! 😉
KEY INGREDIENTS TO MAKE HEALTHY HONEY CHOCOLATE CHIP COOKIES
Let’s go over what you’ll need to make these healthy chocolate chip cookies! I’ve learned a lot about the science of chocolate chip cookies over the years, so I’m going to share that information with you to ensure your cookies turn out with the perfect taste and texture too!
Flour. You’ll start with white whole wheat flour. Yes, such a thing actually exists — and it’s not a combination of white (aka all-purpose) flour and whole wheat flour! Instead, white whole wheat flour is made by finely grinding a special type of soft white wheat (hence the name!), whereas regular whole wheat flour comes from a heartier variety of red wheat. This gives white whole wheat flour a lighter taste and texture, which lets the soft texture of these cookies truly shine!
Hint: The difference between white whole wheat flour and regular whole wheat flour is similar to the difference between red and green grapes. Same health benefits, just a different color and slightly different taste!
Tip: I’ve also included my top recommendations about how to make these honey chocolate chip cookies gluten-free in the Notes section of the recipe!
Cornstarch. That might sound like a strange ingredient for cookies… It’s generally used to thicken sauces and soups! However, cornstarch is also a great addition to your cookies. This is because it absorbs moisture (just like in sauces!), which keeps your cookies nice and soft. It also prevents the formation of really long gluten strands. Long gluten strands create a really tough texture… So adding the cornstarch helps keep these cookies chewy instead!
Butter. We’re only using a small amount of melted butter in these cookies! You can’t completely omit the butter… That leads to bready textures, rather than soft and chewy. And if you used softened butter and tried to beat it with the honey, that would incorporate more air into the cookie dough. More air leads to a crispier texture. Using melted butter yields the perfect soft and chewy texture!
Tip: Coconut oil or stick-style vegan butter also work, if you’d like to make your healthy honey chocolate chip cookies dairy-free!
Sweeteners. Based on this recipe’s name, I’m sure you can guess the first one… It’s honey! However, because of honey’s liquid consistency, using pure honey would add way too much liquid to the cookie dough, which would make your healthy chocolate chip cookies turn out cakey or bready. They’d also spread like crazy on the baking sheet — basically into one giant cookie blob!
To combat that issue, you’ll use half honey and half liquid stevia. Stevia is a plant-based, no-calorie sweetener that contains nothing refined or artificial (aka it’s clean eating friendly!), and it’s also highly concentrated. You just need ½ teaspoon — and that definitely prevents us from adding too much liquid to this cookie dough!
Tip: Many stevia brands and products have different sweetness levels, so they’re not necessarily 1-for-1 substitutes for each other. For the best results, I highly recommend using the same liquid stevia that I do! This is the liquid stevia that I use because I love its sweet flavor and don’t notice any strange aftertaste like with some other stevia products. You can find it at many health-oriented grocery stores, but I buy mine online here because that’s the best price I’ve found. (And you’ll use it in all of these recipes of mine too!)
Chocolate chips. Yes, I actually learned some nerdy things about chocolate chips that I want to share with you! I actually use a combination of dark chocolate chips (I love these!) and miniature chocolate chips (I’m obsessed with these!) in these honey chocolate chip cookies. The dark chocolate chips provide a big burst of chocolate, while the mini chocolate chips ensure that every bite contains at least one morsel of chocolate.
And the reason I love both of those particular chips? They melt much better than other brands, which makes these healthy honey chocolate chip cookies taste even better when they’re fresh from the oven!
But I’m getting ahead of myself…
HOW TO MAKE THE BEST HONEY CHOCOLATE CHIP COOKIES
We still need to talk about how to make the best healthy honey chocolate chip cookies! This recipe is easy and straightforward, but I still have some tips for you to make sure your cookies turn out perfectly soft and chewy.
Measure correctly. I know, I know… I say this ALL the time — but it’s that important! Make sure you measure all of the ingredients correctly. This is key, especially for the flour and honey.
For the flour, use this method or a kitchen scale. (← That’s the one I own!) Too much flour will make the dough dry, and that leads to cakey, bready, or dry cookies. If it’s measured correctly, your healthy honey cookies will turn out perfectly soft and chewy!
For the honey, I recommend using tablespoons, rather than a scale. Fill that tablespoon all the way to the brim! The meniscus (the nerdy science term for the top surface of the honey!) needs to at least be level with the lip of the tablespoon, if not slightly above, to ensure you add the full amount.
Tip: If you’d rather use a kitchen scale to measure the honey, then you’ll need to convert the measurement to grams using honey’s density before doing so. Do NOT measure by liquid ounces! You’ll end up using the wrong amount if you use liquid ounces, and that will ruin the texture of your cookies.
No chilling required. Great news — you can bake these cookies as soon as you’ve mixed up the dough! And that just means you get to eat your honey chocolate chip cookies that much sooner. 😉
Transfer + flatten the cookie dough. The cookie dough is a bit too sticky for shaping with your hands, so use a spoon and spatula to transfer it to your baking sheet instead. (I use this mini spatula. Isn’t it cute??)
These cookies don’t really spread, so you’ll need to flatten those mounds of cookie dough before popping them in the oven. They look the same before and after baking — just no longer raw!
Do not overbake. This is my #1 secret for soft and chewy cookies! Remove them from the oven a minute or two earlier than you’d expect, when the centers still feel a little soft and underdone. The heat from the hot baking sheet will continue to cook the centers all the way through while you let them rest before transferring them to a wire rack — without overbaking the outsides or edges!
If you pulled your cookies from the oven later, when the centers felt firm and fully baked all the way through, you’d actually end up overbaking your cookies. The heat from the baking sheet would continue cooking the cookies, so they’d turn out cakey, bready, or dry.
But if you remove them when they still feel a little soft, your healthy honey chocolate chip cookies will turn out perfectly chewy — just like “regular” cookies!
FAQS ABOUT HEALTHY HONEY CHOCOLATE CHIP COOKIES
Are these honey chocolate chip cookies gluten-free, low calorie, low fat, clean eating, or sugar-free?
Yes! As written, the recipe is naturally clean eating, low fat, low calorie (compared to “traditional” recipes!), and contains no white sugar. I’ve also included gluten-free and dairy-free options for these honey chocolate chip cookies in the Notes section of the recipe!
What can I substitute for the white whole wheat flour?
Whole wheat pastry flour is the perfect substitute! Regular whole wheat flour and all-purpose flour also work really well. You can also try oat flour, but be really careful when measuring it because it tends to be a bit more absorbent than wheat-based flours.
Can I substitute something for the cornstarch? Or omit it?
I haven’t tried substituting anything for the cornstarch, so I’m not personally sure. You’re welcome to omit it, but your cookies won’t be quite as soft and chewy. (See the “Cornstarch” header in the “Key Ingredients to Make Healthy Honey Chocolate Chip Cookies” section above for more info!)
What can I use instead of the liquid stevia?
I’ve shared a few alternatives in the Notes section of the recipe, so check there!
My cookies turned out cakey or bready. Why is that?
The main culprits are too much flour, not enough honey, and overbaking. See the “Measure correctly” and “Don’t overbake” headers in the “How to Make the Best Honey Chocolate Chip Cookies” section for more info!
What’s the best way to store these honey chocolate chip cookies? And how long do they last?
Store them in an airtight container. If stored at room temperature, they’ll keep for at least three days (if not longer!). If stored in the refrigerator, they’ll keep for closer to a week, possibly longer. These honey chocolate chip cookies freeze really well too!
Time to enjoy your batch of freshly baked cookies! And when you make your own, remember to snap a picture and share it on Instagram using #amyshealthybaking and tagging @amyshealthybaking IN the photo itself! (That guarantees I’ll see your picture! 🙂 ) I’d love to see your healthy honey chocolate chip cookies!

Healthy Honey Chocolate Chip Cookies
Ingredients
- 1 cup (120g) white whole wheat flour or gluten-free* flour (measured like this)
- 1 tsp cornstarch
- ½ tsp baking soda
- ¼ tsp salt
- 2 tbsp (28g) unsalted butter or coconut oil, melted
- 1 large egg white, room temperature
- 1 ½ tsp nonfat milk, room temperature
- 1 ½ tsp vanilla extract
- 3 tbsp (45mL) honey
- ½ tsp liquid stevia (see Notes!)
- 2 tbsp (28g) dark chocolate chips
- 1 tbsp (14g) miniature chocolate chips, divided
Instructions
- Preheat the oven to 325°F, and line a baking sheet with silicone baking mat or parchment paper.
- In a medium bowl, whisk together the flour, cornstarch, baking soda, and salt. In a separate bowl, stir together the butter, egg white, milk, and vanilla. Stir in the honey and liquid stevia. Add in the flour mixture, stirring just until incorporated. Fold in the dark chocolate chips and ½ tablespoon of miniature chocolate chips.
- Drop the cookie dough onto the prepared baking sheet using a spoon and a spatula. Flatten to no more than ½" thick using a spatula. (The cookies don’t spread much, if at all!) Gently press the remaining miniature chocolate chips into the tops. Bake at 325°F for 9-11 minutes. Cool on the baking sheet for 10 minutes before transferring to a wire rack.
Notes
View Nutrition Information + Weight Watchers Points
You may also like Amy’s other recipes…
♡ The Ultimate Healthy Soft & Chewy Chocolate Chip Cookies
♡ Healthy Practically Flourless Chocolate Chip Cookies
♡ Healthy Banana Chocolate Chip Cookies
♡ Healthy Chocolate Chip Peanut Butter Cookies
♡ Healthy Chocolate Chip Oatmeal Cookies
♡ Healthy Pumpkin Chocolate Chip Cookies
♡ Healthy Coffee Chocolate Chip Cookies
♡ …and the rest of Amy’s healthy cookie recipes!












Thank you for this nut free healthy recipe! Mine were extremely dense though not really a cookie texture.
I really appreciate your interest in my recipe Maggie! Did you make any modifications to the recipe, including those listed in the Notes section? Also, how did you measure the flour? Did you use a kitchen scale or measuring cups? If the latter, can you describe how you used them to measure? 🙂
There is no white whole wheat flour in Thailand.
Can I substitute with regular whole wheat flour? Thank you!
I really appreciate your interest in my recipe Ormom! I’ve actually covered this in the Notes section of the recipe (located directly underneath the Instructions). I know it can be easy to miss! 😉 I’d love to hear what you think of these cookies if you try them!
Hi I followed the recipe as described but mine turned out a bit cakey? Any thoughts where I might have gone wrong 🙂
I really appreciate your interest in my recipe Andy! I’m happy to help! 🙂 How long did you bake your cookies, and how much did you flatten them before baking? Also, did you make any modifications to the recipe, including those listed in the Notes section? Finally, how did you measure the flour — with a kitchen scale or measuring cups?
Hi, I baked them for 13 minutes in the end as they still looked a bit underdone at 11…I thought I had flattened them quite a lot, although I was surprised that they rose as much as they did, so possibly flatter on the next batch?
No modifications and I measured using digital kitchen scales
Thanks again
Thanks for the information Andy — super helpful! When these cookies are baked for too long, that actually makes them turn cakey. (The most common culprit is too much flour, but if you used a kitchen scale, then that shouldn’t be your issue.) These cookies are done baking when the centers still look and feel slightly underdone! The centers will actually finish baking when they’re left on the warm metal baking sheet for 10 minutes at the end of Step 3. I highly recommend baking them for no longer than 11 minutes — and I typically bake mine no longer than 9 minutes! Less baking time should help them taste less cakey and more chewy. 🙂
Thanks for the help, did the last batch for 9 minutes and they were less cakey I’ll keep experimenting to see if I can get them less fluffy 🙂
It’s my pleasure, Andy! I’m always happy to help. 🙂 I’d recommend using half the baking soda for your next batch to help decrease their fluffiness!
These are great! I subbed the egg white for 1/4 c. unsweetened applesauce (used my last egg for breakfast) and they were great! My kids loved them too!!
I’m so glad you and your kids enjoyed these cookies Michelle! That means so much to me! 🙂 Thank you for sharing your applesauce modification too — I always love hearing what tweaks work!
Hi there, I can’t get my hands on any Vanilla Stevia, to substitute this it says 1/2cup of brown sugar? Is this correct as it sounds like an awful lot. Also, do you still add the honey aswell as the brown sugar?
I really appreciate your interest in my recipe Ryan! If you can’t find the same liquid stevia that I use, then yes — substitute ½ cup of brown sugar for both the honey AND the stevia. If you’re using brown sugar, you will not use honey. Liquid stevia is very concentrated in sweetness level, which is why you need a lot more brown sugar compared to stevia. 🙂 I can’t wait to hear what you think of these cookies!
Dear Amy, those look fantastic !
If I’m substituting maple syrup for the honey, should I put the same amount ?
Also can I use baking powder instead of baking soda (maybe it will work if I let the dough sit for a bit ?) ? (It’s hard to find baking soda in France that’s why !)
I’m so honored that you want to try this recipe of mine too Caty! Yes, use the same amount of pure maple syrup. I didn’t realize it was so hard to find baking soda (sodium bicarbonate) in France! If you’d like to use baking powder, then ¾ teaspoon instead. I can’t wait to hear what you think of these cookies! 🙂
Awesome !
And very last question : (sorry I’m asking so many things, I’m new to baking and very perfectionist haha sonI don’t wanna mess anything up !)
I don’t have vanilla extract (and it’s way too expensive), should I add a little more stevia instead ? How much ?
Thank you !!
No need to apologize Caty! I completely understand. 🙂 As much as you might not want to hear this, vanilla extract is worth every penny. It provides a richness and buttery flavor (especially in my cookie recipes!), and it’s nearly impossible to substitute that flavor with any other ingredient.
If pure vanilla extract is too expensive for you, then see if you can find imitation vanilla. That works just as well in baking recipes, and it’s usually a fraction of the price! Imitation vanilla contains the same ingredient (vanillin) as pure vanilla extract, so it tastes very similar. The main difference is that pure vanilla extract that comes from vanilla beans also contains 70+ other minor ingredients that come from the vanilla bean pods during the extraction process, whereas imitation vanilla doesn’t contain those 70+ other minor ingredients because it isn’t extracted from vanilla beans (and therefore it’s much cheaper!). In baking recipes, where the recipe requires a trip into the oven (as opposed to something like ice cream that doesn’t!), the flavor from most of those other 70+ ingredients gets lost, which is why imitation vanilla is such a great alternative for baking recipes when a baker is on a tight budget. It adds virtually the same flavor for a fraction of the price!
Here is an example of pure vanilla extract that is readily available in the US, and here is an example of imitation vanilla. While I know you might not have those brands, I wanted to share those links just to give you an idea of the price difference (especially price per fluid ounce)! Vanilla, whether pure or imitation, is such a staple in baking recipes that it’s really worth having on hand. 🙂
Waw thank you again for all these informations !
I actually have vanilla flavoring (aroma) but I thought it was so different that it was not worthy to use instead !
Can’t wait to make those !!
That’s wonderful Caty — what a great coincidence!! I’m so happy for you! 🙂 I’m so excited to hear what you think of these cookies!
Amy, those may be the best cookies I had in my life, I’m serious !!
I made them with maple syrup and I actually only had orange stevia (same brand as yours) so that’s what I used and they came out being insanely delicious ????????????
Thank you sooooo much ❤️
I’m SO glad you loved these cookies Caty!! That truly means the world to me that you’d call them the best cookies you’ve ever had — WOW! That’s the best compliment ever! Thank you SO much for sharing that with me!! ♡
I made these cookies last minute for a friend’s birthday party and they were a hit! Thank you for sharing such healthy and yummy recipes – I can’t wait to try more!
I’m so honored that you made these cookies for your friend’s birthday party Nayeon — that truly means the world to me! I’m even more excited that everyone loved them!! 🙂 Thank you so much for taking the time to let me know! And I can’t wait to hear what you decide to make next!
These were soooo yummy!! I chose not to use the vanilla stevia and just used honey… they were sweet enough for my taste! They were so fluffy and chewy. Just what I was craving!
Thank you for the awesome recipe 🙂
I’m so glad you loved these cookies Jenna! Thank you for taking the time to let me know — that truly means a lot! 🙂
Hi…how would more air make the texture crispier?
I’m honored that you’d like to try making this recipe Traci! These cookies were designed to be soft and chewy, not crisp or crunchy. However, I do have a recipe for the ultimate healthy crunchy chocolate chip cookies here! If you’re looking for a crispy texture, that recipe will probably be a much better option. 🙂 I’d love to hear what you think if you try making either of my cookie recipes!