Learn how to make bakery-style pecan scones at home! They’re really soft and moist inside, with an added crunch from the nuts nestled inside of the dough and pressed into the tops. These breakfast scones are lightly sweetened, and they use a special (but common!) ingredient to achieve a classic bakery-style flavor. You can whip up this easy recipe any day of the week — they only take 30 minutes to make!

a rimmed baking sheet holding healthy pecan scones – easy recipe – egg free, clean eating, low fat, no refined sugar

For Thanksgiving, my family generally gravitates towards familiar favorites and prepares the same dishes and desserts for our feasts. We stuck with tradition again this past year, so I planned ahead and bought some of the key ingredients we needed in October.

At the store, I reached for the biggest bag of pecans I could find. We mix them into the savory stuffing and my great-grandma’s cranberry salad, along with adding double the amount to the filling of a classic or chocolate pecan pie, and I didn’t want to run out partway through our marathon cooking session.

overhead view of a rimmed baking sheet holding healthy triangular-shaped pecan scones – easy recipe – soft, moist, gluten free, eggless, low sugar

But by the end of the night, when the dishes were stacked in the sink and leftovers safely tucked away inside of the fridge…

Over a pound of pecans still sat in the bag on the kitchen counter. With just five people at our Thanksgiving feast, we didn’t need quite as many as I thought!

a light gray plate holding a healthy homemade pecan scone and espresso mug – easy breakfast scone recipe – soft, moist, egg free, no refined sugar

Although I love toasting them to snack on plain, I thought it’d be fun to bake with some of them too. That resulted in a few batches of these healthy pecan scones! They’re a fun breakfast treat that’s surprisingly quick and easy to whip up any day of the week, including regular weekdays, lazy weekends, and — come to think of it! — even a special occasion like Thanksgiving morning.

a rimmed baking sheet holding healthy pecan scones – easy recipe – whole wheat, low fat, egg free, no refined sugar

QUICK OVERVIEW – HEALTHY PECAN SCONES

Difficulty: Fairly easy, including for many beginner bakers.

Taste: Lightly sweetened with nutty notes throughout from the pecans.

Texture: Soft and tender on the inside, a bit of a crust on the outside, and crunchy pecans in every bite.

overhead view of a glass mixing bowl of flour with a pastry cutter resting inside, plus a second smaller glass bowl of chopped pecans beside it – used to make healthy pecan scones

KEY INGREDIENTS TO MAKE HEALTHY PECAN SCONES

Let’s talk about the ingredients you’ll need to make these bakery-style pecan scones at home! I’m hoping you already have milk, baking powder, and salt… So we’ll cover the more interesting ingredients.

Flour. To make these pecan scones healthier, I opted for white whole wheat flour. Yes — such a thing actually exists! Contrary to how it may sound, white whole wheat flour is not just a combination of regular whole wheat flour and white (aka all-purpose!) flour.

Here in the US, farmers grow two main types of wheat: red and white. They have essentially the same health benefits, like extra fiber and micronutrients! The former is used to make regular whole wheat flour, and it has a heartier taste and texture. It’s also darker in color. The latter is used to make (you guessed it!) white whole wheat flour. Compared to red wheat, it has a lighter appearance, taste, and texture that’s closer to all-purpose flour.

Hint: It’s similar to the difference between red and green grapes! They have similar health benefits but a different appearance and flavor.

Basically… It’s the best of both worlds! By using white whole wheat flour, you get the health benefits of whole wheat, but you also get the lighter flavor and softer texture that you’d expect in bakery-style scones.

Tip: If you’d like to make your pecan scones gluten free, then see the Notes section of the recipe. I’ve shared my top recommendations there!

overhead view of triangular-shaped healthy pecan scones on a baking sheet – easy recipe – soft, moist, egg free, gluten free, no refined sugar

Cold butter. This is a key ingredient — and the temperature is especially important! When you put the scones in the oven, the butter starts to melt. That creates tender little pockets in the dough. If your butter starts to soften or melt ahead of time, you lose some of that beautifully soft and moist texture.

Tip: Freezing isn’t necessary for this recipe! Just use your butter straight from the refrigerator. That’s cold enough!

Hint: This is why I strongly recommend against substituting coconut oil. It has a much lower melting point (around 76°F, compared to butter’s of about 95°F), so it generally starts to soften or even melt just sitting in the mixing bowl at room temperature.

For a dairy free alternative, use stick-style vegan butter instead! I really like this one and this one. Both make excellent scones!

Tub-style butter is already soft when chilled, and it only gets softer at room temperature… So it’s basically like coconut oil. Stay away from tub-style butter or margarine for the best texture in your homemade scones!

a rimmed baking sheet holding healthy pecan scones – easy recipe – whole wheat, low calorie, clean eating, egg free, no refined sugar

Greek yogurt. This is one of my favorite healthy baking ingredients! In these pecan scones, Greek yogurt adds the same moisture to the dough as extra butter or heavy cream — but for a fraction of the calories. It also adds a protein boost!

Pure maple syrup. Instead of refined granulated sugar, you’ll sweeten your healthy pecan scones with pure maple syrup. It’s the kind that comes directly from maple trees, and it’s generally sold in thin glass bottles or squat plastic jugs (like this!). There should only be one ingredient on the label: maple syrup!

Tip: Skip the pancake syrup and sugar free maple syrup! These are made with other ingredients and therefore behave differently, so they’ll affect the texture of your baked goods. This is especially true of sugar free maple syrup. It’s generally water-based, so if you tried substituting it in this recipe, your scones would collapse while cooling and turn out denser. For the best results, use the real kind!

Almond extract. Did you guess correctly?? This is the special ingredient that gives your homemade scones that irresistible bakery-style flavor. It’s my favorite extract! Almond extract adds a lovely sweetness to baked goods, so it makes these healthy pecans scones taste a bit sweeter than they actually are.

a small pile of chopped pecans on a white cutting board – used to make healthy pecan scones

Pecans. A fairly obvious ingredient, I’m sure! 😉 I like to chop the pecans so they’re on the small side to ensure every bite contains at least a morsel or two. I aim for somewhere between the size of miniature and regular chocolate chips.

I also have another pecan tip for you…

Do not toast them first.

I almost always toast my pecans before using them in baking recipes. I love how it brings out their sweetness, takes away some of their earthiness, and gives them a richer flavor. However, if you toast your pecans before using them to make these…

The ones on top may turn borderline burnt by the time the scones are ready to come out of the oven. (I just might know from personal experience. 😉 )

So this is an instance where laziness pays off! Tear open the bag, give them a chop, and fold the pecans right into your scone dough. No toasting or other prep work necessary!

a rimmed baking sheet holding triangular-shaped healthy pecan scones on a white marble countertop – easy recipe – gluten free, vegan, low fat, no refined sugar

HOW TO MAKE THE BEST PECAN SCONES

Now that you’ve assembled your ingredients, let’s talk about how to make the best pecan scones. I have a few tips for you, starting with…

Measure correctly. I say this all the time, so I know I sound like a broken record — but it’s really important! Especially for the flour and yogurt. Too much flour or not enough yogurt will make your scones crumbly and dry, rather than soft and moist. Use this method (← and my special fork trick for the flour!) or a kitchen scale (← that’s the one I own!) to make sure your homemade scones turn out with the perfect bakery-style texture.

Cold ingredients. Remember what we covered above, about keeping the butter cold for as long as possible? To achieve those tender little pockets in your scones as they bake, you don’t want the butter to melt while you’re mixing up the dough. Using cold ingredients helps prevent the butter from softening too soon, so reach for yogurt, maple syrup, and milk straight from the refrigerator. Don’t bring them up to room temperature first!

a rimmed baking sheet holding healthy pecan scones – soft, moist, whole wheat, clean eating, low sugar, made with greek yogurt

Shape, brush + slice. The dough is fairly sticky, so use a spatula to shape it into a circle on your baking sheet. (These are the ones I use — aren’t they cute??)

Next, brush the tops and sides with milk. This helps seal moisture into the dough, and it also creates a bit of a crust on the outside. I love that texture contrast!

Finally, slice the dough circle into 8 wedges with a sharp knife — but leave them touching. Do not separate the triangles! This is another trick for really soft and moist scones. If you separated the individual scones before baking, that would expose their sides to the hot oven air and turn those sides as crusty as the tops… But if you leave them nestled up against their neighbors, the sides (and interiors!) stay really soft and tender too.

overhead view of a rimmed baking sheet on a white marble counter holding triangular-shaped healthy pecan scones – gluten free, egg free, made with greek yogurt & no refined sugar

Decorate. Press a few pecan pieces into the top of each scone just before sliding the tray in the oven. Although optional, I think it makes for a pretty finishing touch… As long as you didn’t toast the pecans first. 😉 Also, wait to add the pecans until after you’ve brushed the dough with milk. This helps prevent the nuts from turning too dark!

Bake. Just like traditional recipes, these scones bake at a fairly high oven temperature of 425°F. This helps create that beautiful dark golden crust on the outside. They’re done when the very center of the circle, where all of the triangle points meet, feels firm to the touch.

a healthy pecan scone and white espresso mug resting on a light gray plate – easy breakfast scone recipe – soft, moist, whole wheat, made with greek yogurt & no refined sugar

FAQS ABOUT PECAN SCONES

Are these healthy pecan scones gluten free, egg free, clean eating, low calorie, or low sugar?
Yes — to all of the above! They’re naturally egg free, clean eating, low fat, and both lower calorie and lower sugar. I’ve included my top recommendations for making these pecan scones gluten free in the Notes section of the recipe, and I also included how to make them dairy free and vegan.

Can I use a different flour?
You sure can! See the Notes section for the best alternatives.

Should I freeze the butter?
Nope! That’s not necessary for this recipe. As long as it’s straight from the refrigerator (and your yogurt, milk, and maple syrup are too!), you’re good to go!

Can I substitute coconut oil?
I don’t recommend that. I also don’t recommend using tub-style butter. See the “cold butter” header in the “Ingredients to Make Healthy Pecan Scones” section above for more information!

a rimmed baking sheet of triangular-shaped healthy pecan scones – easy recipe – gluten free, vegan, clean eating, made with no refined sugar

How can I make these pecan scones vegan?
Use stick-style vegan butter (this one is my current favorite!), dairy free milk, and dairy free yogurt. I’ve had great luck with both soy-based yogurt and almond-based yogurt!

Can I use sugar free maple syrup?
Please don’t! It’ll make your scones denser and cause them to collapse while cooling. See the “pure maple syrup” header in the “Ingredients to Make Healthy Pecan Scones” section above for more information!

Can I substitute something for the almond extract?
Vanilla extract is the next best thing!

What are the best pecans to use to make these scones?
Ones that come straight from the bag! Don’t use pecans that you’ve previously toasted… They might taste almost burnt by the time your scones finish baking. (I just might know from personal experience. 😉 )

overhead view of a rimmed baking sheet of triangular-shaped healthy pecan scones – easy recipe – gluten free, vegan, low calorie, made with no refined sugar

How should I store these pecan scones? How long do they last?
Store any leftovers in an airtight container in the refrigerator. They should keep for at least four days, if not longer. I highly recommend reheating them briefly in the microwave before eating any refrigerated ones! When eaten chilled, the scones can taste a bit dry… But a quick trip to the microwave turns their insides soft and tender again.

Can I freeze them?
Absolutely! These freeze and thaw really well. I like to reheat individual scones in the microwave on 30% power until they’re warmed all the way through. I think they almost taste freshly baked when thawed like that!

a white espresso mug & a healthy pecan scone on a light gray plate, with a folded newspaper underneath – easy breakfast scone recipe – whole wheat, egg free, low fat, made with greek yogurt & no refined sugar

Now all that’s missing is a cup of hot coffee or tea… And maybe a second scone to go with it! 😉 Then when you make your own, remember to snap a picture and share it on Instagram using #amyshealthybaking and tagging @amyshealthybaking IN the photo itself! (That guarantees I’ll see your picture! 🙂 ) I’d love to see your healthy pecan scones!

Click here to PIN the recipe and save it for later!

This homemade pecan scones recipe is easy to make — you only need 30 minutes! They’re really soft & moist from yogurt (NO heavy cream!) with chopped pecans throughout. I used a special (but common!) ingredient to give them that bakery-style scone flavor. You probably have it too! A simple, fun & delicious breakfast treat! ♡ pecan scones recipe easy. healthy scones recipe clean eating. egg free scones. healthy scones low calorie. scones recipe no heavy cream. healthy scones recipe greek yogurt.

Healthy Pecan Scones

Yields: 8 scones

These breakfast scones are really soft and moist inside, with an added crunch from the nuts nestled inside of the dough and pressed into the tops. They’re lightly sweetened, and they use a special (but common!) ingredient to achieve a classic bakery-style flavor. Leftover scones will keep for at least four or five days (if not longer!) if stored in an airtight container in the refrigerator. They freeze well too!

5 from 1 vote

Print Recipe Pin Recipe

Ingredients

1 ½ cups (180g) white whole wheat flour or gluten free* flour (measured like this)
1 ½ tsp baking powder
¼ tsp salt
1 ½ tbsp (21g) unsalted butter, cold and cubed
½ cup (120g) plain nonfat Greek yogurt
3 tbsp (45mL) pure maple syrup
3 tbsp + 2 tsp (55mL) nonfat milk, divided
1 tsp almond extract
3 tbsp (42g) diced pecans, divided

Instructions

Preheat the oven to 425°F, and line a baking sheet with a silicone baking mat or parchment paper.
In a medium bowl, whisk together the flour, baking powder, and salt. Cut in the butter with a pastry cutter (highly recommended!) or the back of a fork until the mixture resembles fine crumbs. Stir in the Greek yogurt, maple syrup, 3 tablespoons of milk, and almond extract. Fold in 2 tablespoons of diced pecans.
Using a spatula, shape the dough into a ¾” tall circle on the prepared baking sheet, and brush with the remaining milk. Slice the circle into 8 triangular segments with a sharp knife (but don’t separate them!). Press the remaining diced pecans into the tops.
Bake at 425°F for 23-27 minutes, or until the tops are deep golden and the center feels firm to the touch. Cool on the pan for 5 minutes before transferring to a wire rack to cool completely.

Notes

IMPORTANT MEASURING NOTE – READ BEFORE BEGINNING: It's very important to measure the flour correctly, using this method or a kitchen scale. (← That’s the one I own and love!) Too much will dry out your scones and make the dough crumbly.

IMPORTANT BAKING NOTE – READ BEFORE BEGINNING: Do not separate the 8 dough wedges before baking in Step 3. Instead, leave them touching on the baking sheet! This helps make the insides really moist, soft, and fluffy.

IMPORTANT TASTE NOTE – READ BEFORE BEGINNING: As written, these scones aren’t overly sweet. If you prefer sweeter scones, substitute an additional 1-2 tablespoons of pure maple syrup for an equal amount of milk in the dough. (For example, use 4 tablespoons of pure maple syrup, and reduce the milk in the dough to 2 tablespoons.)

FLOUR ALTERNATIVES: Whole wheat pastry flour, regular whole wheat flour, or all-purpose flour may be substituted for the white whole wheat flour.

BUTTER NOTES + ALTERNATIVE: It’s very important that your butter is cold, straight from the fridge. (Freezing it isn’t necessary for this recipe!) With very cold butter, it won’t heat up until you put the scones in the extremely hot oven, and it will create little air pockets and a very tender crumb when it melts.

For this reason, I don’t recommend substituting coconut oil. It melts at a lower temperature, which affects the texture of your scones. (See the “cold butter” header in my blog post above for more information!) If you do decide to substitute coconut oil, just keep that in mind!

For a dairy free or vegan version, use stick-style vegan butter (I like this one and this one) in place of the unsalted butter for the best results.

SWEETENER ALTERNATIVES: Honey or agave may be substituted in place of the pure maple syrup. I don’t recommend substituting sugar free maple syrup. It's often water-based, which affects the scones’ texture. They usually turn out denser and collapse some while cooling.

MILK ALTERNATIVES: Any milk may be substituted in place of the nonfat milk.

ALMOND EXTRACT NOTE + ALTERNATIVE: Almond extract makes these scones taste a bit sweeter, and it also gives them their “bakery-style” flavor. If you don’t have any, vanilla extract may be substituted for the almond extract.

PECANS NOTES: I like to chop the pecans so they’re in between the size of miniature and regular-sized chocolate chips to ensure every bite contains a nut morsel or two. Use them straight from the bag (don’t toast them first!), and wait to press them into the tops of the scones until after you’ve brushed the dough with milk. Both of these things help prevent the pecans on top from burning.

EGG FREE OPTION: No modifications necessary!

GLUTEN FREE OPTION: For the gluten free flour, I recommend the following: 1 cup (120g) millet flour, ¼ cup (30g) tapioca flour, ¼ cup (30g) brown rice flour, and 1 teaspoon xanthan gum. Most store-bought gluten free flour blends (I really like this one from Bob's Red Mill) will work as well, if they’re measured like this.

DAIRY FREE + VEGAN OPTION: Use stick-style vegan butter (I like this one and this one) in place of the butter, your preferred non-dairy yogurt in place of the Greek yogurt (ie soy- or almond-based), and non-dairy milk in place of the nonfat milk.

HOW TO STORE: Store your scones in an airtight container in the refrigerator. They’ll keep for at least four or five days, if not longer.

I highly recommend reheating leftover scones in the microwave before eating them! It really improves their texture and makes them soft and fluffy again! I heat them on 30% power until they’re warmed all the way through.

These scones also freeze really well!

{gluten free, egg free, clean eating, low fat, dairy free option, vegan option}

DID YOU MAKE THIS RECIPE?I'd love to hear what you think of it in a comment below! If you take a picture, tag @amys.healthy.baking on Instagram or use the hashtag #amyshealthybaking.

View Nutrition Information + Weight Watchers Points

You may also like Amy’s other recipes…
♡  Healthy Almond Scones
♡  Healthy Maple Scones
♡  Healthy Cinnamon Scones
♡  Healthy Chocolate Chip Scones
♡  The Ultimate Healthy Blueberry Scones
♡  Healthy Maple Pecan Granola
♡  Healthy Maple Pecan Oatmeal Cookies
♡  …and the rest of Amy’s healthy scone recipes!