A few weeks ago, one of my new neighbors and I stopped to chat while her nearly three-year-old daughter peddled a tricycle on the sidewalk. “I’ve been meaning to ask you,” my neighbor mentioned. “Do you have any easy chocolate recipes?”
(As the author of this chocolate cookbook, my eyes always light up when somebody else starts a conversation with me about chocolate!)
My neighbor explained that her young daughter loved chocolate treats, especially sweet store-bought pudding cups and fudgsicles… But as a personal trainer, she often wanted homemade or healthier alternatives for her little girl.
I offered to text her links to my one-bowl brownie recipe and flourless brownie recipe, and she looked excited when I explained neither included any refined flour or refined sugar. After waving good-bye to her daughter, slowly riding past the houses on her tricycle, I headed inside to find my phone.
As I typed, a light bulb went off in my head… I still had an entire batch of these fun chocolate treats in my freezer! I quickly piled them onto a plate and brought them over to my neighbor. She sent me a cute picture two minutes later of her toddler halfway through eating one, the chocolate still lingering on her lips. Absolutely adorable!
So when I baked a batch of these healthy double chocolate bran muffins, I immediately knew the girl with whom I wanted to share them! They’re supremely tender and moist, full of chocolate chips and rich chocolate flavor, and also simple to make.
And yes… Judging by my sweet little neighbor girl’s reaction of, “Mmmm! I like it!” after her first bite, they’re totally kid-approved!
KEY INGREDIENTS TO MAKE HEALTHY DOUBLE CHOCOLATE BRAN MUFFINS
Let’s talk about what you’ll need to make these healthy chocolate bran muffins! Like I mentioned, they’re full of wholesome ingredients, the kind that make your mind and body feel good… And somehow magically taste incredible at the same time too. My favorite kind of recipe — especially since it also involves two types of chocolate!
Oat bran. A very important ingredient in bran muffins, don’t you think? Although they both come from oat kernels, oat bran generally looks smaller and choppier than the old-fashioned rolled oats typically used to make oatmeal. Because it comes from the outer part of the oat kernel, oat bran has more fiber and often more protein as well. You can whip up bowls of hot cooked oat bran for breakfast, just like with oatmeal, but… I generally prefer baking muffins with it!
Tip: If you’d like to make your healthy double chocolate bran muffins gluten-free, then substitute certified gluten-free oat bran. It works perfectly!
Cocoa powder. This is the first chocolate component! You’ll need regular unsweetened cocoa powder. Because you’re adding more cocoa powder than flour, these muffins already taste really rich and chocolaty without Dutched or special dark cocoa powder.
Tip: I don’t recommend substituting those last two! They have a different acidity level, which will affect the texture of your muffins. They also taste more muted and bland. Therefore, for the best muffin taste and texture, stick with regular unsweetened cocoa powder!
Flour. I typically reach for regular whole wheat flour when baking these muffins. I love how it has more fiber and micronutrients compared to all-purpose flour!
Tip: If you’d like to make your healthy double chocolate bran muffins gluten-free, then see the Notes section of the recipe. I’ve included how to do so there!
Cinnamon. I know, I know… Cinnamon and chocolate?? Although not exactly the most intuitive pairing, the cinnamon adds a lovely background warmth and makes these muffins taste extra cozy. Yum!
Tip: This is currently my favorite cinnamon! It tastes a bit stronger, sweeter, and richer compared to regular cinnamon. Many stores have started stocking this variety, but I typically buy it online here. (It’s really affordable!)
Butter or coconut oil. Just a small amount! You only need ½ tablespoon to make this entire batch. That really helps keep your healthy double chocolate bran muffins low calorie and low fat! Then the rest of their soft and moist texture comes from…
Greek yogurt. It’s one of my favorite healthy baking ingredients! In this recipe, it adds the same moisture to the batter as extra butter or oil — but for a fraction of the calories. It also gives your healthy chocolate bran muffins a protein boost!
Egg whites. The white contains the majority of an egg’s protein. That protein helps your muffins maintain their shape while cooling, which prevents them from collapsing and ending up overly dense. Instead, with both egg whites, they’ll turn out really soft and moist!
Sweeteners. That’s right — plural! You’ll need two to make this recipe, and both are natural and clean eating friendly. No refined sugar in these bran muffins!
The first is regular unsulphured molasses (not blackstrap!). It’s what gives bran muffins their iconic deep, cozy flavor! Nothing else quite comes close to replicating its taste, so I don’t recommend substituting anything for it, if at all possible.
Tip: Molasses is inexpensive, shelf-stable, and great for all kinds of treats! This is the kind I buy, and you’ll also use it in my other bran muffin recipes, as well as all of these recipes of mine. (And during the holidays, you’ll need it for all of my gingerbread-flavored recipes too!)
The second is pure maple syrup. That’s the kind that comes directly from maple trees and only includes one ingredient: maple syrup! It’s often sold in thin glass bottles or squat plastic jugs (like this).
Tip: Don’t substitute pancake syrup or sugar-free maple syrup! These contain other ingredients, so they behave differently in baking recipes. This is especially true of sugar-free syrup! It’s typically water-based, and that makes your muffins collapse while cooling and turn out dense.
Yes, I know. It’s very tempting to try using just one or the other — but I really hope you don’t! When made entirely with molasses, these muffins didn’t quite taste sweet or chocolaty enough… But when made solely with pure maple syrup, they lacked that traditional “bran muffin” flavor. So for the best taste, mix both into the batter!
Chocolate chips. Time for the second chocolate component! I prefer using mini chocolate chips because their smaller size ensures that every bite contains rich morsels of melty chocolate. These are my current favorites because they taste decadent and melt so well!
HOW TO MAKE HEALTHY DOUBLE CHOCOLATE BRAN MUFFINS
Let’s quickly cover how to make the best healthy chocolate bran muffins! As I promised, this recipe is simple and straightforward to make. I also have some tips to ensure your muffins turn out beautifully soft, moist, and flavorful!
Measure correctly. It’s really important to measure the oat bran, cocoa powder, and flour correctly. Use this method or a kitchen scale. (← That’s the one I own!) Too much of any one will make your muffins dry and bland. Too much cocoa powder can also make them slightly bitter, rather than rich and chocolaty. I promise it’s worth taking a few extra moments to properly measure them!
Mix by hand. Put away your hand-held mixer and stand mixer! Those tend to overmix low-fat batters, like this one. Overmixing can lead to a tough, dense, gummy, or rubbery texture… Not good! Yet if you gently mix by hand, you’ll be rewarded with really soft and tender bran muffins.
Soak the bran. This is my special trick for making perfectly moist bran muffins! I’ve already built it into Step 2 of the recipe.
You’ll mix the oat bran with the Greek yogurt, some milk, and vanilla extract first. Letting the oat bran sit in that liquid mixture while measuring and stirring together the other ingredients lets it start softening ahead of time (similar to the way my overnight oats recipes work!). This means your bran muffins turn out supremely moist and tender without lots of butter or oil. Total win!
Bake. Once you’ve gently stirred together all of the ingredients (remember to do that by hand!) and divided it into your muffin pan, slide that into the oven and set a timer. If you’re anything like me, you’ll feel tempted to sit in front of the glass door and watch as their tops magically rise… No? I’m the only one??
Regardless, they’re ready to come out when the tops feel firm and a toothpick inserted into the center comes out clean or with crumbs attached. Then all that’s left to do is wait (impatiently!) until they’re cool enough to eat!
How do those look for healthy breakfast muffins?? ♡ And when you make your own, remember to snap a picture and share it on Instagram using #amyshealthybaking and tagging @amyshealthybaking IN the photo itself! (That guarantees I’ll see your picture! 🙂 ) I’d love to see your healthy double chocolate bran muffins!

Healthy Double Chocolate Bran Muffins
Ingredients
- 1 ½ cups (180g) oat bran (measured like this and gluten-free if necessary)
- ½ cup (120g) plain nonfat Greek yogurt
- ¾ cup (180mL) nonfat milk, divided
- 2 tsp vanilla extract
- ¾ cup (60g) unsweetened cocoa powder (measured like this)
- ¼ cup (30g) whole wheat flour or gluten-free* flour (measured like this)
- 2 tsp baking powder
- 1 tsp ground cinnamon
- ¼ tsp salt
- ½ tbsp (7g) coconut oil or unsalted butter, melted and cooled slightly
- 2 large egg whites (room temperature)
- ¼ cup (60mL) molasses (room temperature – and see Notes!)
- ¼ cup (60mL) pure maple syrup (room temperature)
- 3 tbsp (42g) miniature chocolate chips, divided
Instructions
- Preheat the oven to 350°F, and coat 12 muffin cups with nonstick spray.
- In a medium bowl, stir together the oat bran, Greek yogurt, ½ cup of milk, and vanilla extract. Let the mixture rest for at least 10 minutes while preparing the remaining ingredients.
- In a separate bowl, whisk together the cocoa powder, flour, baking powder, cinnamon, and salt. In a third bowl, whisk together the coconut oil or butter and egg whites. Stir in the molasses and maple syrup. Add the oat bran mixture, stirring until fully incorporated. Alternate between adding the flour mixture and remaining ¼ cup of milk, beginning and ending with the flour mixture, and stirring just until incorporated. (For best results, add the flour mixture in 3 equal parts.) Fold in 2 ½ tablespoons of miniature chocolate chips.
- Evenly divide the batter between the prepared muffin cups, and press the remaining miniature chocolate chips into the tops. Bake at 350°F for 16-19 minutes or until the tops feel firm to the touch and a toothpick inserted into the center comes out clean or with crumbs attached. Cool in the muffin cups for 5 minutes before carefully transferring to a wire rack.
Notes
View Nutrition Information + Weight Watchers Points
You may also like Amy’s other recipes…
♡ The Ultimate Healthy Chocolate Muffins
♡ Healthy Double Chocolate Zucchini Muffins
♡ Healthy Chocolate Chip Banana Bran Muffins
♡ Healthy Morning Glory Bran Muffins
♡ Healthy Almond Joy Bran Muffins
♡ Healthy Chocolate Oatmeal Snack Cake
♡ Healthy Flourless Chocolate Oatmeal Breakfast Cookies
♡ …and the rest of Amy’s healthy muffin recipes!













Totally in love with this recipe! Look at those muffins! Delicious!
Thanks so much Valeria! 🙂 I’d love to hear what you think if you try them!
YUMMY!!!! Looks so delicious!
Thanks Charlotte! 🙂 I’d love to hear what you think if you try them!
Hello Amy! My friends are coming over this weekend and she has two daughters, a one year old and a four year old so your recipe could not have come at a better time. I will make these muffins tomorrow morning and I will let you know how they turn out, but I am 100% certain they are crazy delicious!
Great minds totally think alike Carmelina!! 😉 You’re SO sweet to make another one of my recipes to share with your guests! I’m totally honored! ♡ I’m really excited to hear what everyone thinks of these muffins!
AMY;
WOW YOUR DOUBLE CHOCOLATE BRAN MUFFINS LOOK SO GOOD AND I AM GOING TO MAKE YOUR MUFFINS NEXT FRIDAY AND I WILL LET YOU KNOW WHAT I THINK OF THE MUFFINS AND HOW MUCH MY FAMILY AND I LOVE THEM.
KIM
You’re so sweet Kim! I’m really excited to hear what your family thinks of these muffins! 🙂
BRILLIANT!! Why have I never thought that chocolate and bran, two of my favorite things, should go together?! MIND BLOWN! YUM!
And I LOVE that story about your neighbors! I love that you always get to know your neighbors, Amy!! <3
Thank you so much sweet pea!! ♡ Chocolate goes with EVERYTHING, right?? ? PS I’m totally okay if you sub something for the molasses so you can have these! ?
Haha! You know me and my crazy diet too well! <3
Two peas, one pod! 😉
Amy is it possible me to sub bran bud cereal ? Also can I use brown sugar instead of the molasses ? Thanks
I really appreciate your interest in my recipe Jordan! I haven’t tried substituting bran bud cereal, so I’m honestly not sure and don’t know how that would turn out. If you’d like to use brown sugar instead of the molasses, you’ll need ¼ cup (48g) and an additional 2 tablespoons of milk to compensate for the missing liquid volume. I’d love to hear what you think of these muffins if you try making them! 🙂
Do you think I could remove the syrup / honey from this as I’m using Brown sugar instead of the molasses? Would I increase the amount of brown sugar ?
If you’d like to substitute brown sugar for the maple syrup, do the same thing as for the molasses: ¼ cup (48g) of brown sugar and an additional 2 tablespoons of milk to compensate for the missing liquid volume. So to use brown sugar for both the molasses and maple syrup, you’ll need a total of ½ cup (96g) of brown sugar + an additional ¼ cup of milk. 🙂 I can’t wait to hear how your muffins turn out Jordan!
Who says you can’t have chocolate for breakfast!? Not me, that’s for darn sure. Definitely need to try these guys out!
I’d love to hear what you think of these muffins if you do, Karly! 🙂
Hello again Ms. Amy! The girls LOVED the muffins! The one year old just had a little nibble but her face lit up when she was chomping on it! The four year old LOVED them too! In fact, she pulled on her mom’s arm and whispered in her ear asking if she could take some home.Needless to say, I packed up the remaining muffins and sent them home with her. I am making another batch today. They are moist, chocolateeee 🙂 and delicious! Thanks a million!
YAY!! Oh my goodness… That mental picture of the four-year-old asking to take some home just melted my heart. I wish I could send some directly to her too! You’re SO sweet to do that! ♡ I’m absolutely honored that these were such a big hit! And as always, thank you SO much for your glowing comment! It made my day Carmelina! 🙂
Hi Amy! I was just about to attempt this recipe but realized that I don’t have molasses. I did some quick research because I have never used it before – do you recommend using fancy or blackstrap molasses? There is also a “cooking molasses” which combines the two types. Just wanted to get your opinion first before I stepped out to buy some – can’t wait to try out your recipe, it looks so yums!!
I truly appreciate your interest in my recipe Lisha! I link to the exact molasses that I use in my recipe. That’s the kind I recommend! 😉 Definitely not blackstrap molasses though! I can’t wait to hear what you think of these muffins!
Amy;
Hi,will whole wheat bran work in your recipe?I have most of your ingredients to make your muffins but I don’t have molasses or maple syrup,I will buy these three ingredients on Friday,then I will make these muffins and I will let you know they turned out and what they taste like etc.
Can your muffins be put in my mini muffin pan?the sugar is this recipe is only 12.4 and the rest of the nutritional information is just fine and it isn’t a concern for me and my diabetes and blood sugar.
Kim
I’ve answered your question about wheat bran in the Notes section Kim! It can be easy to miss. You can easily use a mini muffin pan for these instead! You’ll probably get around 24-28 mini muffins. Start checking on them after about 10-12 minutes because they’ll finish baking sooner than regular-sized muffins! 🙂 I can’t wait to hear what you think of these!
Amy;
Hi,I have almost all of the ingredients to make your double chocalote bran muffins,but I forgot to buy the oat bran,I don’t have molasses,I have bran,I have all of the other ingredients to make your muffins,on Sunday morning after the service is over I will have 4 dozon eggs for cooking and baking.I will make your muffins in three days and then I will get back to you about your muffins and how they taste etc OK Amy.hopefully I can encourage my niece to try your muffins after I bake them in the oven.
Can I make mini muffins with your recipe.I love chocolate in anything that calls for chocolate added into your recipes.I love your healthy recipes because the ingredients are low,healthy and either sugar free or low sugar and your recipes etc.
If I ground up oats and put them with the bran,would that be OK to put in your recipe.
I will make your muffins asap.
I can’t wait to hear what you and your niece think of these Kim! I actually answered your mini muffin comment in my previous response. 😉 If you’re purchasing oat bran, no need to add extra ground up oats! That would actually make your muffins too dry. 🙂