A few weeks ago, one of my new neighbors and I stopped to chat while her nearly three-year-old daughter peddled a tricycle on the sidewalk. “I’ve been meaning to ask you,” my neighbor mentioned. “Do you have any easy chocolate recipes?”
(As the author of this chocolate cookbook, my eyes always light up when somebody else starts a conversation with me about chocolate!)
My neighbor explained that her young daughter loved chocolate treats, especially sweet store-bought pudding cups and fudgsicles… But as a personal trainer, she often wanted homemade or healthier alternatives for her little girl.
I offered to text her links to my one-bowl brownie recipe and flourless brownie recipe, and she looked excited when I explained neither included any refined flour or refined sugar. After waving good-bye to her daughter, slowly riding past the houses on her tricycle, I headed inside to find my phone.
As I typed, a light bulb went off in my head… I still had an entire batch of these fun chocolate treats in my freezer! I quickly piled them onto a plate and brought them over to my neighbor. She sent me a cute picture two minutes later of her toddler halfway through eating one, the chocolate still lingering on her lips. Absolutely adorable!
So when I baked a batch of these healthy double chocolate bran muffins, I immediately knew the girl with whom I wanted to share them! They’re supremely tender and moist, full of chocolate chips and rich chocolate flavor, and also simple to make.
And yes… Judging by my sweet little neighbor girl’s reaction of, “Mmmm! I like it!” after her first bite, they’re totally kid-approved!
KEY INGREDIENTS TO MAKE HEALTHY DOUBLE CHOCOLATE BRAN MUFFINS
Let’s talk about what you’ll need to make these healthy chocolate bran muffins! Like I mentioned, they’re full of wholesome ingredients, the kind that make your mind and body feel good… And somehow magically taste incredible at the same time too. My favorite kind of recipe — especially since it also involves two types of chocolate!
Oat bran. A very important ingredient in bran muffins, don’t you think? Although they both come from oat kernels, oat bran generally looks smaller and choppier than the old-fashioned rolled oats typically used to make oatmeal. Because it comes from the outer part of the oat kernel, oat bran has more fiber and often more protein as well. You can whip up bowls of hot cooked oat bran for breakfast, just like with oatmeal, but… I generally prefer baking muffins with it!
Tip: If you’d like to make your healthy double chocolate bran muffins gluten-free, then substitute certified gluten-free oat bran. It works perfectly!
Cocoa powder. This is the first chocolate component! You’ll need regular unsweetened cocoa powder. Because you’re adding more cocoa powder than flour, these muffins already taste really rich and chocolaty without Dutched or special dark cocoa powder.
Tip: I don’t recommend substituting those last two! They have a different acidity level, which will affect the texture of your muffins. They also taste more muted and bland. Therefore, for the best muffin taste and texture, stick with regular unsweetened cocoa powder!
Flour. I typically reach for regular whole wheat flour when baking these muffins. I love how it has more fiber and micronutrients compared to all-purpose flour!
Tip: If you’d like to make your healthy double chocolate bran muffins gluten-free, then see the Notes section of the recipe. I’ve included how to do so there!
Cinnamon. I know, I know… Cinnamon and chocolate?? Although not exactly the most intuitive pairing, the cinnamon adds a lovely background warmth and makes these muffins taste extra cozy. Yum!
Tip: This is currently my favorite cinnamon! It tastes a bit stronger, sweeter, and richer compared to regular cinnamon. Many stores have started stocking this variety, but I typically buy it online here. (It’s really affordable!)
Butter or coconut oil. Just a small amount! You only need ½ tablespoon to make this entire batch. That really helps keep your healthy double chocolate bran muffins low calorie and low fat! Then the rest of their soft and moist texture comes from…
Greek yogurt. It’s one of my favorite healthy baking ingredients! In this recipe, it adds the same moisture to the batter as extra butter or oil — but for a fraction of the calories. It also gives your healthy chocolate bran muffins a protein boost!
Egg whites. The white contains the majority of an egg’s protein. That protein helps your muffins maintain their shape while cooling, which prevents them from collapsing and ending up overly dense. Instead, with both egg whites, they’ll turn out really soft and moist!
Sweeteners. That’s right — plural! You’ll need two to make this recipe, and both are natural and clean eating friendly. No refined sugar in these bran muffins!
The first is regular unsulphured molasses (not blackstrap!). It’s what gives bran muffins their iconic deep, cozy flavor! Nothing else quite comes close to replicating its taste, so I don’t recommend substituting anything for it, if at all possible.
Tip: Molasses is inexpensive, shelf-stable, and great for all kinds of treats! This is the kind I buy, and you’ll also use it in my other bran muffin recipes, as well as all of these recipes of mine. (And during the holidays, you’ll need it for all of my gingerbread-flavored recipes too!)
The second is pure maple syrup. That’s the kind that comes directly from maple trees and only includes one ingredient: maple syrup! It’s often sold in thin glass bottles or squat plastic jugs (like this).
Tip: Don’t substitute pancake syrup or sugar-free maple syrup! These contain other ingredients, so they behave differently in baking recipes. This is especially true of sugar-free syrup! It’s typically water-based, and that makes your muffins collapse while cooling and turn out dense.
Yes, I know. It’s very tempting to try using just one or the other — but I really hope you don’t! When made entirely with molasses, these muffins didn’t quite taste sweet or chocolaty enough… But when made solely with pure maple syrup, they lacked that traditional “bran muffin” flavor. So for the best taste, mix both into the batter!
Chocolate chips. Time for the second chocolate component! I prefer using mini chocolate chips because their smaller size ensures that every bite contains rich morsels of melty chocolate. These are my current favorites because they taste decadent and melt so well!
HOW TO MAKE HEALTHY DOUBLE CHOCOLATE BRAN MUFFINS
Let’s quickly cover how to make the best healthy chocolate bran muffins! As I promised, this recipe is simple and straightforward to make. I also have some tips to ensure your muffins turn out beautifully soft, moist, and flavorful!
Measure correctly. It’s really important to measure the oat bran, cocoa powder, and flour correctly. Use this method or a kitchen scale. (← That’s the one I own!) Too much of any one will make your muffins dry and bland. Too much cocoa powder can also make them slightly bitter, rather than rich and chocolaty. I promise it’s worth taking a few extra moments to properly measure them!
Mix by hand. Put away your hand-held mixer and stand mixer! Those tend to overmix low-fat batters, like this one. Overmixing can lead to a tough, dense, gummy, or rubbery texture… Not good! Yet if you gently mix by hand, you’ll be rewarded with really soft and tender bran muffins.
Soak the bran. This is my special trick for making perfectly moist bran muffins! I’ve already built it into Step 2 of the recipe.
You’ll mix the oat bran with the Greek yogurt, some milk, and vanilla extract first. Letting the oat bran sit in that liquid mixture while measuring and stirring together the other ingredients lets it start softening ahead of time (similar to the way my overnight oats recipes work!). This means your bran muffins turn out supremely moist and tender without lots of butter or oil. Total win!
Bake. Once you’ve gently stirred together all of the ingredients (remember to do that by hand!) and divided it into your muffin pan, slide that into the oven and set a timer. If you’re anything like me, you’ll feel tempted to sit in front of the glass door and watch as their tops magically rise… No? I’m the only one??
Regardless, they’re ready to come out when the tops feel firm and a toothpick inserted into the center comes out clean or with crumbs attached. Then all that’s left to do is wait (impatiently!) until they’re cool enough to eat!
How do those look for healthy breakfast muffins?? ♡ And when you make your own, remember to snap a picture and share it on Instagram using #amyshealthybaking and tagging @amyshealthybaking IN the photo itself! (That guarantees I’ll see your picture! 🙂 ) I’d love to see your healthy double chocolate bran muffins!

Healthy Double Chocolate Bran Muffins
Ingredients
- 1 ½ cups (180g) oat bran (measured like this and gluten-free if necessary)
- ½ cup (120g) plain nonfat Greek yogurt
- ¾ cup (180mL) nonfat milk, divided
- 2 tsp vanilla extract
- ¾ cup (60g) unsweetened cocoa powder (measured like this)
- ¼ cup (30g) whole wheat flour or gluten-free* flour (measured like this)
- 2 tsp baking powder
- 1 tsp ground cinnamon
- ¼ tsp salt
- ½ tbsp (7g) coconut oil or unsalted butter, melted and cooled slightly
- 2 large egg whites (room temperature)
- ¼ cup (60mL) molasses (room temperature – and see Notes!)
- ¼ cup (60mL) pure maple syrup (room temperature)
- 3 tbsp (42g) miniature chocolate chips, divided
Instructions
- Preheat the oven to 350°F, and coat 12 muffin cups with nonstick spray.
- In a medium bowl, stir together the oat bran, Greek yogurt, ½ cup of milk, and vanilla extract. Let the mixture rest for at least 10 minutes while preparing the remaining ingredients.
- In a separate bowl, whisk together the cocoa powder, flour, baking powder, cinnamon, and salt. In a third bowl, whisk together the coconut oil or butter and egg whites. Stir in the molasses and maple syrup. Add the oat bran mixture, stirring until fully incorporated. Alternate between adding the flour mixture and remaining ¼ cup of milk, beginning and ending with the flour mixture, and stirring just until incorporated. (For best results, add the flour mixture in 3 equal parts.) Fold in 2 ½ tablespoons of miniature chocolate chips.
- Evenly divide the batter between the prepared muffin cups, and press the remaining miniature chocolate chips into the tops. Bake at 350°F for 16-19 minutes or until the tops feel firm to the touch and a toothpick inserted into the center comes out clean or with crumbs attached. Cool in the muffin cups for 5 minutes before carefully transferring to a wire rack.
Notes
View Nutrition Information + Weight Watchers Points
You may also like Amy’s other recipes…
♡ The Ultimate Healthy Chocolate Muffins
♡ Healthy Double Chocolate Zucchini Muffins
♡ Healthy Chocolate Chip Banana Bran Muffins
♡ Healthy Morning Glory Bran Muffins
♡ Healthy Almond Joy Bran Muffins
♡ Healthy Chocolate Oatmeal Snack Cake
♡ Healthy Flourless Chocolate Oatmeal Breakfast Cookies
♡ …and the rest of Amy’s healthy muffin recipes!













AMy, I am seeking recipes that do not include sugar at all. St evia is fine. Have you experimented with that at all? Syrups are just sugar in another form ans I cannot have it! Please respond. Marilyn
I really appreciate your interest in my recipes Marilyn! You can find all of my recipes that contain stevia here. In the future, the best way to find specific recipes is to click on the “Recipes” tab at the top of my blog or use the Search Bar (located at the top of my blog, if you’re viewing on a computer, or the bottom of my blog, if you’re viewing on a mobile device). 🙂 I can’t wait to hear what recipe of mine you try next!
These are super delicious. Love the almost nutty flavor that the oat bran delivers. I made mini muffins and got 38 full size muffins. We’re at 5000 ft + and I was a little nervous about plunging ahead without adjustments – but worked out totally fine, just as you promised on another post – all my recipes work at high altitude. Off to the grandkids for a Valentine’s day treat. Thank you Amy for a ‘doesn’t even taste healthy treat’. Tricky. 😉
I’m so glad you enjoyed these muffins Norma! That means so much to me that you’d say they don’t taste healthy — that’s the biggest and BEST compliment ever!! Thank you! 🙂 I hope you and your grandchildren had a wonderful Valentine’s Day!
Didn’t care much for these. I found the molasses flavour overpowering and they had a slightly bitter aftertaste despite using your method of measuring. Could have been a touch sweeter in my opinion. I also found the baking time to be quite off – I had to cook for around 22-23 minutes and had to let them rest a good 1/2 hour before I was able to get them out of the muffin pan in one piece. I’m trying to up the fibre in my daughters diet and was hoping these would be a great treat for her. If I don’t like the taste I’m quite sure they won’t be a hit with the kiddos. 🙁
I really appreciate your interest in my recipe Amy! Let’s figure out what happened. 🙂 Did you use blackstrap molasses, by chance? Or did you use the same brand of molasses that I linked to in the Ingredients list? Blackstrap molasses is pretty bitter compared the regular molasses, so if you use that, it’s probably the source of the bitter flavor. That’s strange that your muffins took that much longer to bake! Did you use oat bran or wheat bran? Did you make any modifications or substitutions, including those listed in the Notes section? We’ll get this sorted out so you and your kiddos enjoy the muffins! 🙂
Amy;
Hi,I haven’t made these muffins yet but I am going to make your muffins as soon as I buy the six ingredients to make your muffins,I have the rest of the ingredients in the kitchen.There are now two new members in my family as my brother recently got married and his wife and her son from her previous relationship are slowly getting used to living with us(a month today) and when I have all of the ingredients to make your recipe I will let you know how much we love and enjoy eating your muffins.
Kim
Congratulations to your brother and his new wife and son! That’s so wonderful for you and your family. 🙂 I can’t wait to hear what everyone thinks of these bran muffins! I really hope they like them — they’re some of my all-time favorite muffins!
Hi Amy,
I made these and they are dangerous!!!! I was a bit more generous with the chocolate chips (I think I used about 80 grams of them). I didn’t have maple syrup or molasses so I used honey as my sweetener. I had one about an hour after baking them and one after dinner (3 hours later). The one that had sat for longer was less crumbly. These are so much healthier than standard muffins, and in my opinion, they taste a lot better. They are very rich and chocolatey with no oily texture or aftertaste.
Thank you for this recipe. I will be making these again!
I’m so glad you loved these muffins, Ruth! That means so much to me that you plan on making them again — and that you’d call them dangerous! What a huge compliment! 🙂 And I’m never opposed to extra chocolate chips! 😉
Wow, these look great! I’ve been looking for a healthy chocolate muffin for ages, so am sure to gve this a go. Just one question though: I don’t live in the states and can’t find oat bran in any stores here. Do you think I could substitute for oatflour, or quick oats? Thanks!
I really appreciate your interest in my recipe, Nyna! If you pulse your quick oats a few times in a food processor or blender, that’ll be the best substitute. 🙂 I can’t wait to hear what you think of these muffins!
Oh, Amy, these muffins surprised me. When I made them last night, they were delicious but a touch dry. I was a little slow in taking them out of the oven when the timer went off at 16 minutes and assumed that was the reason. This morning, the muffin was perfectly moist and the flavors had melded (and mellowed) after spending the night in an airtight bag. For me, these are the perfect breakfast! I am going to freeze a few to see how they do, and to stop myself from eating the entire batch today?
I’m so glad you enjoyed these muffins, Sharon! That means a lot to me that you’d call them the perfect breakfast — I’m honored! 🙂 I’ve found that’s such a handy trick with chocolate treats, like brownies and muffins. They turn moister (and fudgier!) overnight when sealed in an airtight container. It’s like magic! 😉
I made these yesterday as part of this weeks meal prep. I used honey and maple syrup because I didn’t want to buy molasses. I also used an entire large egg because I didn’t know what I was going to do with the 2 eggs yolks I was going to have after using the whites. I used a dark chocolate cocoa powder and subbed espresso powder for the cinnamon to bring out the rich chocolate flavor. They are delicious! They are a bit dry, which is totally my fault, because I was scared to take them out at 16 minutes and left them in for 19. I am happy with my first bran muffin attempt! Thanks, Amy!
I’m so glad you enjoyed these muffins, Erica! I love your idea of espresso powder — I need to remember that! 🙂
can you use buttermilk
Yes, you can substituted buttermilk in place of the nonfat milk! 🙂 I can’t wait to hear what you think of these muffins Sheila!
Is it possible to add a mashed banana to the double chocolate bran muffins?
If you want to use mashed banana, then you can substitute that in place of the Greek yogurt. 🙂